PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016479262.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 79aa    MW: 8892.01 Da    PI: 9.4891
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016479262.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.87e-101155244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     g+WT+   + + +a + + ++   +W+ +a+ +g g+t++++k ++
   XP_016479262.1 11 GSWTAKQNKAFEKALAVYDKDtcdRWSNVAKAVG-GKTAEEVKRHY 55
                     89********************************.**********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.736868IPR017884SANT domain
SMARTSM007173.9E-8961IPR001005SANT/Myb domain
PfamPF002491.2E-71155IPR001005SANT/Myb domain
SuperFamilySSF466895.85E-131167IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-51159IPR009057Homeodomain-like
CDDcd001671.68E-71255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MSSMSSQHGS GSWTAKQNKA FEKALAVYDK DTCDRWSNVA KAVGGKTAEE VKRHYEILVQ  60
DVFYIESGRV PFPKYKTTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-37478176RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016479262.13e-54PREDICTED: protein RADIALIS-like 1
SwissprotQ58FS31e-37RAD_ANTMA; Transcription factor RADIALIS
TrEMBLQ9LEG41e-37Q9LEG4_SOLLC; SANT/MYB domain protein
STRINGSolyc10g052470.1.13e-37(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.26e-35RAD-like 6